PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000392668
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 196aa    MW: 22572.4 Da    PI: 6.2576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000392668genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.38.5e-38171433127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                    pGfrFhPtde lv +yLk+k++g++ ++   i+e+d+ k+ePw++p    + +e+ew+fF++ + k   ++r+ rat++g+ k+tg ++e+ ++ +
  MDP0000392668  17 PGFRFHPTDELLVRYYLKNKIQGTDSHFRYLIPEIDVSKYEPWEIPaFFPEVHENEWFFFTRPKYKDIDKTRRDRATDQGFYKSTGDEREIRAEeS 112
                    9************************999888***************545556889*************************************9856 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                    ++++g k+ L+f++gr  k++ktdWv+he++
  MDP0000392668 113 ESVIGKKRFLTFHEGRGLKAKKTDWVIHEFK 143
                    6679*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3814154IPR003441NAC domain
PROSITE profilePS5100538.93315177IPR003441NAC domain
PfamPF023652.1E-2017143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTTEEGDAVH VNVIPLPGFR FHPTDELLVR YYLKNKIQGT DSHFRYLIPE IDVSKYEPWE  60
IPAFFPEVHE NEWFFFTRPK YKDIDKTRRD RATDQGFYKS TGDEREIRAE ESESVIGKKR  120
FLTFHEGRGL KAKKTDWVIH EFKETEVGSF VLCLLKNRSP SYKKPKGDPI CGKLADSGAN  180
SEDNQAAVSD VIPEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D3e-2511647174NAC domain-containing protein 19
3swp_C3e-2511647174NAC domain-containing protein 19
3swp_B3e-2511647174NAC domain-containing protein 19
3swp_A3e-2511647174NAC domain-containing protein 19
3swm_D3e-2511647174NAC domain-containing protein 19
3swm_C3e-2511647174NAC domain-containing protein 19
3swm_B3e-2511647174NAC domain-containing protein 19
3swm_A3e-2511647174NAC domain-containing protein 19
4dul_B4e-2511644171NAC domain-containing protein 19
4dul_A4e-2511644171NAC domain-containing protein 19
1ut7_B4e-2511644171NO APICAL MERISTEM PROTEIN
1ut7_A4e-2511644171NO APICAL MERISTEM PROTEIN
1ut4_B4e-2511644171NO APICAL MERISTEM PROTEIN
1ut4_A4e-2511644171NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008343474.11e-144PREDICTED: protein FEZ-like
RefseqXP_008360142.11e-142PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLM5X7M13e-65M5X7M1_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-34NAC transcription factor-like 9